bionty.Pathway#

class bionty.Pathway(species='all', source=None, version=None, **kwargs)#

Bases: Bionty

Pathway.

1. Gene Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/GO/?p=summary

2. Pathway Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/PW/?p=summary

Parameters:

  • species – name of Species entity.

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_versions.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_versions.