bionty.CellType#

class bionty.CellType(species='human', source=None, version=None, **kwargs)#

Bases: Bionty

Cell type ontologies.

1. Cell ontology Edits of terms are coordinated and reviewed on: obophenotype/cell-ontology

2. Human cell atlas ontology Edits of terms are coordinated and reviewed on: HumanCellAtlas/ontology

Parameters:

  • species – name of Species entity.

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_versions.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_versions.